Introduction
The origins of multicellular life have long fascinated scientists, with choanoflagellates offering a unique window into this evolutionary transition. As the closest living relatives of animals, these single-celled organisms harbor genes remarkably similar to those essential for complex biological processes in animals. Recent advancements have allowed researchers to explore the functionality of these ancient genes in modern contexts, providing insights into both evolution and potential medical applications.
Choanoflagellates: The Ancestors We Overlooked
Novel Studies Uncover Unicellular Relatives
Recent research has shed new light on the evolutionary origins of animal life by demonstrating the functional resilience of ancient genes. A collaborative study by researchers from Queen Mary University of London and the University of Hong Kong explored how a gene from choanoflagellates, free-living unicellular and colonial eukaryotes, can integrate seamlessly into the genome of modern mammals. This groundbreaking work opens new avenues in evolutionary biology and regenerative medicine.

Choanoflagellates are often described as the closest living relatives of animals. Though single-celled, their genomic architecture contains genes that mirror those involved in complex multicellular processes in animals. In this study, the researchers focused on Sox2, a gene essential for stem cell differentiation. They replaced the Sox2 gene in mouse stem cells with its choanoflagellate counterpart. The results show the engineered stem cells not only survived but also retained their functionality, ultimately producing healthy, chimeric mice with observable traits like dark eyes and patches of black fur.

What This Means for Evolutionary Biology
The findings emphasize that critical genes for multicellular development existed long before the rise of animals. The choanoflagellate version of Sox2, originally involved in more basic cellular tasks, demonstrates an extraordinary continuity of function across nearly a billion years of evolution. “We’re witnessing an extraordinary continuity of function,” said Alex de Mendoza, one of the study’s authors. This research suggests that these ancient genes laid the groundwork for the transition from single-celled organisms to complex multicellular life.
Other studies corroborate this evolutionary timeline. A recent article in eLife analyzed the genomes of 19 choanoflagellate species and identified hundreds of gene families previously thought to be animal-specific. These include genes related to immunity (e.g., Toll-like receptors) and development (e.g., Notch/Delta signaling), further demonstrating that the genomic toolkit for animal life began evolving well before multicellularity emerged.
Implications for Regenerative Medicine
Beyond evolutionary insights, this research holds promise for medical applications. By understanding how ancient genes function in modern contexts, scientists could refine techniques for stem cell engineering and regenerative therapies. The ability of choanoflagellate genes to perform roles similar to their mammalian counterparts highlights untapped potential in biomedicine. As regenerative medicine continues to push boundaries, leveraging evolutionary continuity could pave the way for innovative treatments.
Looking Forward
This research is a compelling reminder of the deep evolutionary connections that link all forms of life. It invites us to reexamine the roles of so-called “primitive” genes, not just as vestiges of the past but as vital players in current biological processes. The successful incorporation of a choanoflagellate gene into a mouse model showcases the unity of life across billions of years and underscores the importance of studying life’s simplest forms to understand its most complex manifestations.
References
Gao, Y., Tan, D.S., Girbig, M. et al. The emergence of Sox and POU transcription factors predates the origins of animal stem cells. Nat Commun 15, 9868 (2024). https://doi.org/10.1038/s41467-024-54152-x
eLife. “Gene Family Innovation, Conservation and Loss on the Animal Stem Lineage.” https://elifesciences.org/articles/34226.
Hake KH, West PT, McDonald K, Laundon D, Reyes-Rivera J, Garcia De Las Bayonas A, Feng C, Burkhardt P, Richter DJ, Banfield JF, King N.2024.A large colonial choanoflagellate from Mono Lake harbors live bacteria. mBio15:e01623-24.https://doi.org/10.1128/mbio.01623-24